Preface: Phylogenetics and Phylogenetic
8 December 18, 2000 Ron Shamir Yuval Inbar and Tzvika Hartman Based on a scribe of Gidon Shavit and Chaim Linhart, January 31, 1999.
Preface: Phylogenetics and Phylogenetic Trees
What is Phylogenetics?
Character Based Methods
A Simple Solution?
Branch and Bound
Compatibility and Parsimony
Finding the Tree
Distance Based Methods
Distance between Proteins - PAM matrices
Distance between DNA Sequences - Jukes-Cantor Model
Least Squares Methods
Likelihood of a Tree
Finding the Optimal Branch Lengths
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