Tel Aviv University, Blavatnik School of Computer Science

Analysis of DNA Chips and Gene Networks:

Collected scribe notes

Prof. Ron Shamir

Course 0368-4137-01

Topic Newest notes Older notes
Introductory topics 2007 2005  2004  2002
 
Microarray normalization and analysis of differential expression 2007 2005  2004
 
Clustering
       k-means, SOM, graph formulations, PCC, CAST 2007 2005  2004  2002a  2002b
 
Click, hierarchical clustering 2007 2005  2004a  2004b  2002a  2002b
 
HCS for clustering cDNA 2002
 
FPF, K-Boost, PCA 2009
 
Biclustering
Cheng & Church 2007 2005  2004  2002
 
Samba, ISA, CTWC 2007 2005  2004a  2004b  2002
 
Plaid models 2002
 
Order-preserving submatrix problem (OPSM) 2002
 
Bimax 2009
 
Classification
Introduction, dimension reduction 2007 2005  2004
 
Support vector machines (SVM), knowledge-based analysis, classification examples 2007 2005  2002
 
Promoter analysis 2007 2005  2004
 
Networks
Genetic networks 2007 2005a  2005b  2004  2002a  2002b
 
Bayesian networks 2007 2005  2004  2002
 
Metabolic networks 2007
 
Protein interaction networks 2005
 
Gene enrichment analysis: GO, TANGO, GSEA 2009
 
Integrated analysis of gene expression and other data 2009
 
Sequencing by hybridization (SBH)
Sequence reconstruction, positional SBH 2004 2002
 
Resequencing, genotyping, gapped chips, long targets, errors 2004 2002
 
Universal tag arrays 2002
 

Links to other relevant material


rshamir AT tau DOT ac DOT il


View My Stats