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Irit Gat-Viks School of
Computer Science, |
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Ph.D. student in the Computational
Genomics Laboratory,
Supervisor: Prof. Ron Shamir.
Academic Degrees
BsC (Life science) Tel Aviv
University, 1997.
BsC (Computer science) Tel Aviv
University, 1999.
Msc (Life Science, Laboratory of Information Biology &
Molecular Evolution) Tel Aviv University, 2001.
Publications:
·
Refinement and expansion of
signaling pathways: the osmotic response network in yeast.
Irit Gat-Viks and Ron Shamir.
To appear in Genome Rresearch.
·
The factor graph network model
for biological systems.
Irit Gat-Viks, Amos Tanay, Daniela Raijman, and Ron Shamir
-
RECOMB 2005, pp. 31-47, Lecture Notes in
Bioinformatics 3500, Springer,
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Journal
of Computational Biology. 2006. 13(2):165-81.
·
Modeling and Analysis of
Heterogeneous Regulation in Biological Network
Irit Gat-Viks, Amos Tanay and Ron
Shamir
Journal of Computational Biology. 2004. 11(6):1034-49.
Supplementary information,
application
website.
·
A Global View of the Selection
Forces in the Evolution of Yeast Cis-Regulation
Amos Tanay, Irit Gat-Viks and Ron
Shamir
Genome Research. 2004. 14: 829-834.
website
·
Reconstructing Chain Functions
in Genetic Networks
Irit Gat-Viks, Ron shamir, R.M. Karp and Roded sharan
- Proceedings of Pacific Symposium on Biocomputing, 2004 (PSB '04).
- SIAM Journal of Discrete Mathematics. 2006. 20, 727-740.
·
Chain functions and scoring
functions in genetic networks
Irit Gat-Viks and Ron Shamir
Proceedings of ISMB 2003 (Bioinformatics Vol. 19 Supplement 1, pp. i108--i117
(2003)).
·
Scoring clustering solutions by
their biological relevance
Irit Gat-Viks, Roded Sharan and Ron Shamir
Bioinformatics. 2003. 19: 2381-2389.
Teaching
- "Laboratory for bioinformatics tools”, Spring 2005/6.
- "Laboratory for bioinformatics tools”, Spring 2004/5.
- TA in the course "Computational Genomics", Fall 2003/4
- TA in the course "Analysis of gene expression and DNA chips", Spring 2004/5.
Other