Dina Schneidman
PhD student in Computer Science at
Tel-Aviv University.
My main research interest is developing docking algorithms in Structural Bioinformatics
group of Prof. Wolfson and Prof. Nussinov
Projects
Teaching
Publications
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Schneidman-Duhovny D, Dror O, Inbar Y, Nussinov R, Wolfson HJ.
PharmaGist: a webserver for ligand-based pharmacophore detection.
Nucleic Acids Research 2008.
[Abstract ]
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Mashiach E, Schneidman-Duhovny D, Andrusier N, Nussinov R, Wolfson HJ.
FireDock: a web server for fast interaction refinement in molecular docking.
Nucleic Acids Res. 2008
[Abstract ]
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Julsing MK, Vasilev NP, Schneidman-Duhovny D, Muntendam R, Woerdenbag
HJ, Quax WJ, Wolfson HJ, Ionkova I, Kayser O. Metabolic
stereoselectivity of cytochrome P450 3A4 towards deoxypodophyllotoxin:
in silico predictions and experimental validation. European
Journal of Medicinal Chemistry
[Abstract ]
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Emekli U, Schneidman-Duhovny D, Wolfson HJ, Nussinov R, Haliloglu T.
HingeProt: Automated Prediction of Hinges in Protein Structures. Proteins
70:1219-27, 2008.
[Abstract ]
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Schneidman-Duhovny D, Nussinov R, Wolfson HJ.
Automatic prediction of protein interactions with large scale motion.
Proteins (CAPRI issue) 69:764-773, 2007.
[Abstract ]
- Miled N, Yan Y, Hon W, Perisic O, Zvelebil M, Inbar Y,
Schneidman-Duhovny D, Wolfson HJ, Backer JM, Williams RL.
Mechanism of two classes of cancer mutations in the phosphoinositide
3-kinase catalytic subunit. Science 317:239-242, 2007.
[Abstract ]
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Inbar Y, Schneidman-Duhovny D, Dror O, Nussinov R, Wolfson HJ.
Deterministic Pharmacophore Detection via Multiple Flexible
Alignment of Drug-Like Molecules. In Proc. of RECOMB 2007,
vol. 3692 of Lecture Notes in Computer Science, pp. 423-434. Springer Verlag.
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Dror O, Schneidman-Duhovny D, Shulman-Peleg A, Nussinov R, Wolfson HJ, Sharan R.
Structural Similarity is a Prominent Feature of Genetic Interactions.
Proceedings of the RECOMB Satellite on Systems Biology, San Diego.
Lecture Notes in Bioinformatics 2006.
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Schneidman-Duhovny D,Nussinov R, Wolfson HJ. Predicting molecular
interactions in silico II: protein-protein and protein-drug docking.
Frontiers Med. Chem. 3, 585-613, 2006.
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Schneidman-Duhovny D, Inbar Y, Nussinov R, Wolfson HJ.
PatchDock and SymmDock: servers for rigid and symmetric docking.
NAR, 33: W363-W367, 2005.
[Abstract ]
[ FREE Full Text ]
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Schneidman-Duhovny D, Inbar Y, Nussinov R, Wolfson HJ. Geometry based
flexible protein docking. Proteins, 60: 224-231, 2005.
[Abstract ]
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Inbar Y, Schneidman-Duhovny D, Halperin I, Oron A, Nussinov R, Wolfson HJ.
Approaching the CAPRI Challenge with Efficient Geometry Based Docking. Proteins 60: 217-223, 2005.
[Abstract ]
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Wolfson HJ, Shatsky M, Schneidman-Duhovny D, Dror O, Shulman-Peleg A, Ma B, Nussinov R.
From structure to function: methods and applications.
Curr. Prot. and Peptide Sci. 6: 171-83, 2005.
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Shatsky M, Dror O, Schneidman-Duhovny D, Nussinov R, Wolfson HJ.
BioInfo3D: a suite of tools for structural bioinformatics
Nucl. Acids. Res. 32: W503-W507, 2004.
[ Abstract ]
[ FREE Full Text ]
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Gidalevitz T, Biswas C, Ding H, Schneidman-Duhovny D, Wolfson HJ, Stevens F, Radford S, Argon Y.
Identification of the N-terminal peptide binding site of glucose-regulated protein 94.
J Biol Chem. 279(16):16543-52, 2004.
[ Abstract ]
[ PDF file ]
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Schneidman-Duhovny D,Nussinov R, Wolfson HJ.
Predicting molecular interactions in silico II: protein-protein and protein-drug docking.
Curr. Med. Chem. 11(1): 91-107, 2004.
[ Abstract ]
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Schneidman-Duhovny D, Inbar Y, Polak V, Shatsky M, Halperin I,
Benyamini H, Barzilai A, Dror O, Haspel N, Nussinov R, Wolfson HJ.
Taking geometry to its edge: fast unbound rigid (and hinge-bent) docking.
Proteins. 52(1): 107-12, 2003.
[ Abstract ]
[ PDF file ]
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Duhovny D, Nussinov R, Wolfson HJ.
Efficient Unbound Docking of Rigid Molecules.
In Gusfield et al., Ed. Proceedings of the 2'nd Workshop on Algorithms in Bioinformatics(WABI) Rome, Italy,
Lecture Notes in Computer Science 2452, pp. 185-200, Springer Verlag, 2002
[ PDF file ]
duhovka@tau.ac.il
Office address: Schrieber Building, Room 010, School of
Computer Sciences, Tel-Aviv University, Tel-Aviv 69978, Tel-Aviv 69494,
Israel.
Phone: +972-3-640-5395