Tel Aviv University School
of Computer Science
Spring 2007
Analysis of Gene Expression, DNA Chips and Gene Networks
0368-4137-01
http://www.cs.tau.ac.il/~rshamir/ge/07/
Ron Shamir
Thursdays 16-19 Schreiber 008
Contact Info:
| |
|
Email |
Phone |
Office |
Office Hours |
| Instructor: |
Ron Shamir |
rshamir |
640-5383 |
Schreiber 014 |
By appointment |
| TA: |
Igor Ulitsky |
ulitskyi |
640-5394 |
Schreiber 011 |
By appointment |
Course Description and Prerequisites
Lecture notes:
The most recent complete set of lecture notes is avalilable for the
2005 course.
Lecture notes for 2002 and
2004 contain some additional topics not covered in
2005.
Revised lecture notes will gradually appear in this website.
Course Plan:
Note: schedule is still tentative due to the strike.
|
Lect
|
Date
|
Topic
|
Notes
|
Speaker
|
Scribe
|
|
1
|
1/3
|
Introductory Concepts
|
pdf
|
Ron Shamir
|
Inbal Goldstein, Pere Ben-Daniel
|
|
2
|
8/3
|
Normalization and Differential Gene Analysis
|
pdf
|
Rani Elkon
|
Yuri Solodkin, Andrey Stolarenko
|
|
3
|
15/3
|
Clustering I
|
pdf
|
Ron Shamir
|
Oved Orfali, Yifat Felder
|
|
4
|
22/3
|
Clustering 2, Biclustering 1
|
pdf
|
Ron Shamir
|
Gil Hoffer, Tal Peleg
|
|
5
|
24/5
|
Biclustering 2
|
pdf
|
Ron Shamir
|
Shelly Mahlev, Shaul Karni
|
|
6
|
31/5
|
Classification 1
|
pdf
|
Gideon Dror
|
Yonit Halperin, Dudu Burstein
|
|
7
|
7/6
|
Classification 2
|
pdf
|
Ron Shamir
|
Hadas Tzur, Roee Navon
|
|
8
|
14/6
|
Promoter Analysis
|
pdf
|
Chaim Linhart, Ron
Shamir
|
Oren Ish-Shalom, Guy Tannenbaum
|
|
9
|
21/6
|
Genetic Networks 1
|
pdf
|
Ron Shamir
|
Maria Natanzon, Yevgenia Koren
|
|
10
|
22/6
|
Bayesian Networks
|
pdf
|
Irit Gat-Viks
|
Ofer Lavi, Ran Potshter
|
|
11
|
28/6
|
Metabolic Networks
|
pdf
|
Ron Shamir
|
Boris Manilov, Yuri Phink
|
Course Material and Handouts
Course requirements
Bibliography: textbooks, background and more.
Scribe instructions
Assignment 1 (Due 22/3/07)
Assignment 2 (Due 12/4/07)
Assignment 3 (Due 14/6/07)
Assignment 4 (Due 5/7/07)
Useful Links
rshamir AT tau DOT ac DOT il
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