Tel Aviv University School of Computer Science

Spring 2004
Analysis of Gene Expression Data, DNA Chips and Gene Networks

0368-4137-01

http://www.cs.tau.ac.il/~rshamir/ge/04/

Ron Shamir

Thursdays 16-19 Schreiber 006

Contact Info:


		Email	Phone	Office	Office Hours
Instructor:	Ron Shamir	rshamir	640-5383	Schreiber 014	By appointment
TA:	Amos Tanay	amos	640-5394	Schreiber 011	By appointment

Mailing List

Course Description

Lecture notes:

A complete set of lecture notes from the 2002 course is available in http://www.cs.tau.ac.il/~rshamir/ge/02/ge02.html

Revised lecture notes will gradually appear in this website.

Lect Date Topic Notes Speaker Scribe

1 4/3 Introductory Concepts pdf Ron Shamir Eran Balan and Maayan Goldstein

2 11/3 SBH pdf Ron Shamir Eyal Balla and Dror Lupu
3 18/3 SBH 2 pdf Ron Shamir Alon Shalita and Omer Czerniak

4 25/3 Low level gene expression analysis ps.gz Rani Elkon Erez Yaffe and Dan Cohen

5 15/4 Clustering 1 pdf Ron Shamir Michal Ozery-Flato and Israel Steinfeld

6 22/4 Clustering 2, Biclustering 1 ps.gz Ron Shamir Eelena Zilberman and Igor Kotenkov

7 29/4 Classification pdf (draft) Zohar Yakhini Eyal Balla and Dror Lupo

8 13/5 Biclustering 2 pdf Amos Tanay Michal Ozery-Flato and Israel Steinfeld

9 20/5 Promoter Analysis pdf Chaim Linhart, Ron Shamir Eran Balan and Maayan Goldstein

10 27/5 Networks 1 pdf Ron Shamir Alon Shalita and Omer Czerniak

11 3/6 Networks 2 pdf (draft) Irit Gat-Viks Erez Yaffe and Dan Cohen

12 10/6 Networks 3 Ron Shamir Eelena Zilberman and Igor Kotenkov

Lect	Date	Topic	Notes	Speaker	Scribe
1	4/3	Introductory Concepts	pdf	Ron Shamir	Eran Balan and Maayan Goldstein
2	11/3	SBH	pdf	Ron Shamir	Eyal Balla and Dror Lupu
3	18/3	SBH 2	pdf	Ron Shamir	Alon Shalita and Omer Czerniak
4	25/3	Low level gene expression analysis	ps.gz	Rani Elkon	Erez Yaffe and Dan Cohen
5	15/4	Clustering 1	pdf	Ron Shamir	Michal Ozery-Flato and Israel Steinfeld
6	22/4	Clustering 2, Biclustering 1	ps.gz	Ron Shamir	Eelena Zilberman and Igor Kotenkov
7	29/4	Classification	pdf (draft)	Zohar Yakhini	Eyal Balla and Dror Lupo
8	13/5	Biclustering 2	pdf	Amos Tanay	Michal Ozery-Flato and Israel Steinfeld
9	20/5	Promoter Analysis	pdf	Chaim Linhart, Ron Shamir	Eran Balan and Maayan Goldstein
10	27/5	Networks 1	pdf	Ron Shamir	Alon Shalita and Omer Czerniak
11	3/6	Networks 2	pdf (draft)	Irit Gat-Viks	Erez Yaffe and Dan Cohen
12	10/6	Networks 3		Ron Shamir	Eelena Zilberman and Igor Kotenkov

Course requirements

Bibliography: textbooks, background and more.

Scribe instructions

Useful Links

archive of the course Algorithms in Molecular Biology , including detailed lecture notes .

links to related courses given worldwide.

rshamir AT tau.ac.il

Spring 2004 Analysis of Gene Expression Data, DNA Chips and Gene Networks

http://www.cs.tau.ac.il/~rshamir/ge/04/

Ron Shamir

Thursdays 16-19 Schreiber 006

Useful Links

Spring 2004
Analysis of Gene Expression Data, DNA Chips and Gene Networks