Multiple sequence alignment

18/01/99


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תוכן העניינים

Multiple sequence alignment

Why we do multiple alignments?

Why we do multiple alignments?

An example of Multiple Alignment

Multiple Alignment Method

Multiple Alignment Method

Steps in Multiple Alignment

Choosing sequences for alignment General considerations

Multiple alignment in GCG

Choosing sequences for PileUp

Output of Pileup

Output of Pileup

Output of Pileup

Output of Pileup

PileUp considirations

Pileup special options

Displaying a multiple alignment in GCG

Example of PrettyBox Output

ShadyBox

ShadyBox Output

ClustalW- for multiple alignment

ClustalW- for multiple alignment

Running ClustalW

Running ClustalW

Using ClustalW

Output of ClustalW

ClustalW options

ClustalW options

ClustalX - Multiple Sequence Alignment Program

ClustalX

ClustalX

ClustalX

ClustalX

ClustalX

ClustalX

Blocks database and tools

The BLOCKS web server

The Blocks Searcher tool

The Blocks Searcher tool

The BLOCKS Database

The Block Maker Tool

שקופית PPT

מחבר: Leon Esterman

דואר אלקטרוני: izik@math.tau.ac.il

דף בית: http://www.math.tau.ac.il/~izik

מידע נוסף:
Presentation created by Dr. Irit Orr from the bioinformatics unit of the Weizmann institute of Science