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Preface: Phylogenetics and Phylogenetic
8 December 18, 2000 Ron Shamir Yuval Inbar and Tzvika Hartman Based on a scribe of Gidon Shavit and Chaim Linhart, January 31, 1999.
Preface: Phylogenetics and Phylogenetic Trees
What is Phylogenetics?
Phylogenetic Trees
Character Based Methods
A Simple Solution?
Parsimony
Small Parsimony
Weighted Parsimony
Large Parsimony
Branch and Bound
Local Search
Compatibility
Compatibility and Parsimony
Pairwise Compatibility
Finding the Tree
Distance Based Methods
Pairwise Distances
Distance between Proteins - PAM matrices
Distance between DNA Sequences - Jukes-Cantor Model
Least Squares Methods
UPGMA
Neighbor Joining
Maximum Likelihood
Likelihood of a Tree
Finding the Optimal Branch Lengths
Bibliography
About this document ...
Peer Itsik
2001-01-01
