In the Metabolic Forum, we discuss new ideas / approaches / concepts in the field of metabolic modeling. Please contact Omer Eilam if you would like bring up a subject for discussion.
The forum meetings are scheduled once every two weeks, on Thursdays at 10:30 till 12:00, in room 309 in the Schreiber building.
| Date | Topic | Presenter |
|---|---|---|
| To be annouced | Introduction to convex analysis | Tuvik Beker |
| To be annouced | Multidimensional Optimality of Microbial Metabolism | Allon Wagner |
| Date | Topic | Presenter | Presentation |
|---|---|---|---|
| 2011-12-15 | Metabolic Flux and the Regulation of Mammalian Cell Growth | Shiri Stempler | paper |
| 2011-12-15 | Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity | Noa Cohen | paper |
| 2011-12-15 | Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0 | Allon Wagner & Co. | download |
| 2011-01-07 | Thermodynamics-Based Metabolic Flux Analysis | Liram Vardi | download |
| 2011-03-03 | Changing Diets - Changing Minds | Vali Eilam | download |
| 2011-02-03 | Development & production of chemicals for the agriculture sector | Dedi Luxembourg & Natan Mick from Luxembourg Industries Ltd. | |
| 2011-01-21 | Environmental distribution of prokaryotes in natural samples | Javier Tamames | download |
| 2011-01-07 | Evidence for an Alternative Glycolytic Pathway in Rapidly Proliferating Cells | Adi Shabi | download |
| 2010-12-23 | Multi-level reconstruction of metabolic network models for Arabidopsis: From subcellular compartmentalization to tissue-specificity of metabolic pathways | Shira Mintz | download |
| 2010-12-09 | Design and analysis of synthetic carbon fixation pathways | Arren Bar-Even | download |
| 2010-11-25 | Identification of Gene Amplification Targets for Improving Lycopene Production | Keren Yizhak | download |
| 2010-11-25 | Drug Off-Target Effects Predicted Using Structural Analysis in the Context of a Metabolic Network Model | Ori Folger | download |
| 2010-11-11 | Prediction of novel synthetic pathways for the production of desired chemicals | Adam Weinstock | download |
| 2010-10-28 | Emergent cooperation in microbial metabolism | Eytan Ruppin | |
| 2010-10-28 | Automatically reconstructed models in the SEED framework | Raphy Zarecki | download |
| 2010-10-14 | Microbial Ecology | Omer Eilam | download |
| 2010-07-29 | Optimal strategies for fighting persistent bugs | Dr. Daniel Polani | |
| 2010-06-03 | Uncovering inter-species metabolic relations via flux-balance analysis | Raphy Zarecki | |
| 2010-05-27 | Inflammation and cancer: back to Virchow? | Hadas Zur | download |
| 2010-05-06 | Review: A Computational Framework for the Topological Analysis and Targeted Disruption of Signal Transduction Networks, Dasika, Burgard and Maranas, Biophysical Journal 2006 | Keren Yitzchak | download |
| 2010-04-29 | Review: Towards a genome-scale kinetic model of cellular metabolism, Smallbone et al., BMC Systems Biology 2010 | Adi Shabi | download |
| 2010-04-22 | Metabolic Modeling of the Brain | Shiri Stempler | |
| 2010-04-08 | Nutrient-sensitized screening for drugs that shift energy metabolism from mitochondrial respiration to glycolysis", Gohil et al. 2010 | Livnat Jerby | download |
| 2010-03-25 | Interpreting Metabolomic Profiles using Unbiased Pathway Models, Deo et al. 2010 | Keren Yitzchak | download |
| 2010-03-11 | Evolutionary Game Theory | Adi Shabi | download |
| 2010-01-21 | From genomes, through metabolic networks, to ecology | Omer Eilam | download |
| 2009-12-24 | Applications of genome-scale metabolic reconstructions | Adi Shabi and Keren Yitzchak | download |
| 2009-12-10 | Introduction to Statistics | Omer Eilam | download |
| 2009-12-03 | Computational reconstruction of metabolic network models for human tissue metabolism: Application to liver metabolism | Livnat Jerby | download |
| 2009-11-12 | Metabolic Flux Balance Analysis with Context-dependant Biomass | Tomer Benyamini | |
| 2009-06-07 | Network-Based Prediction of Metabolic Enzymes' Subcellular Localization | Shira Mintz | |
| 2009-05-21 | Predicting metabolic engineering knockout strategies for chemical production | Naama Tepper | |
| 2009-05-07 | The first reconstruction of the plant genome-scale metabolic network | Shira Mintz | |
| 2009-01-22 | Review: "An Integrative Dynamic Model of Brain Energy Metabolism Using In Vivo Neurochemical Measurements", Cloutier et al. 2009 | Adi Shabi and Livnat Jerby | |
| 2008-12-18 | A Shourt Course in Systems Biology | Ori Folger | download |