Seminar in Computational Genetics, Spring, 2011

(0368-4173-01)

Instructor :  Dr. Eran Halperin.
Where: Shenkar, Physics building, 114
When: Tue., 4-6pm ,

Important Information

Schedule for the semester

• Lecture 1: Oren on DNA sudoku
• Lecture 2: Artyom on compression
• Lecture 3: Noa + Roni on ancestry inference
• Lecture 4: Omri + Barak on phasing from sequencing
• Lecture 5: Livnat - structural variation
• Lecture 6: Alon and Elad on Identity by Descent
• Lecture 7: Yaara + Oron on assembly
• Lecture 8: Adam and David on copy number variation from SNP data
• Lecture 9: Yael on bacterial mixtures

Papers

• Read mapping
• Assembly
• Compression
• RNA quantification
• DNA Sudoku
• Structural Variation
• Discovery of gene fusion
• Phasing sequence data
• Extracting bacterial frequencies
• Ancestry inference from SNPs
• Discovering identity by descent