Supplementary Material, Movie 1: Gly668-xxx-Gly672
towards Ser656-xxx-Gly660
To see the movie, press right bottom -> Animate -> Play
The movie presents the pathway that was ranked first according to the colony function.
The pathway starts from the stable conformation involving the Gly668 and Gly672 residues towards the less
stable conformation involving the Ser656 and Gly660 residues. At first (around Step 60), the pathway leads to the
energetically most favorable conformation of packing via the Gly668-xxx-Gly672 motif where the distance
between the helices is very small (6.5 Angstrom) and the crossing angle is around -35 degrees. The helices
move subjected to the ridges-into-groves packing and the stability at each step along the pathway is determined
by the steric properties of the residues that mediate the inter-helix contact.