Publications:

  1. Kolodner E K, Shulman-Peleg A, Naor D, Brand P, Dao M, Eckert A, Gogouvitis S V, Harnik D, Jaeger M C, Kyriazis D P, Lorenz M, Messina A, Shribman A, Tal S, Voulodimos A S, Wolfsthal Y (2011) Data-intensive Storage Services on Clouds: Limitations, Challenges and Enablers, to be published as a book chapter in "European Research Activities in Cloud Computing", by Cambridge Scholars Publishing.
  2. Kolodner E K, Tal S, Kyriazis D, Naor D, Allalouf M, Bayuh E, Bonelli L, Brand P, Eckert A, Elmroth E, Gogouvitis S, Harnik D, Hernandez F, Jaeger M C, Lorenz M, Manuel J, Messina A, Shulman-Peleg A, Talyansky R, and Voulodimos A. (2011) A Cloud Environment for Data-intensive Storage Services, accepted to IEEE Cloudcom 2011.
  3. Halevi S, Harnik D, Pinkas B and Shulman-Peleg A (2011) Proofs of Ownerhip in Remote Storage Systems, 18th ACM Conference on Computer and Communications Security (CCS 2011), ACM SIGSAC, Chicago, Illinois. [PDF]
  4. Harnik D, Kolodner E K, Ronen S, Satran J, Shulman-Peleg A and Tal S (2011) Secure Access Mechanism for Cloud Storage, Scalable Computing: Practice and Experience, vol. 12, num. 3, pp. 317.336, 2011. [Link]
  5. Harnik D, Pinkas B, Shulman-Peleg A (2010) Side Channels in Cloud Services, the Case of Deduplication in Cloud Storage, IEEE Security & Privacy, vol. 8, no. 6, pp 40-47. [Link]
  6. Shulman-Peleg A, Nussinov R, Wolfson H J (2009) RsiteDB: A database of protein binding pockets that interact with RNA nucleotide bases, Nucleic Acids Research, Vol 37, pp. D369-73 [PDF] [Link].
  7. Shulman-Peleg A, Shatsky M, Nussinov R and Wolfson H.J (2008) Prediction of interacting single-stranded RNA bases by protein binding patterns, Journal of Molecular Biology, Vol 379, pp 299-316 [PDF] [Link].
  8. Shulman-Peleg A, Shatsky M, Nussinov R. and Wolfson H. J (2008) MultiBind and MAPPIS: Web servers for multiple alignment of protein 3D binding sites and their interactions, Nucleic Acids Research, Vol. 36, W260-W264. [PDF][Link].
  9. Dror O, Schneidman-Duhovny D, Shulman-Peleg A, Nussinov R, Wolfson H. J, Sharan R (2008) Structural Similarity of Genetically Interacting Proteins, BMC Systems Biology 2, 69. [PDF] [Link].
  10. Shulman-Peleg A, Shatsky M, Nussinov R. and Wolfson H.J. (2007) Spatial chemical conservation of hot spot interactions in protein-protein complexes. BMC Biol. Oct 9;5(1):43 [PDF] [Link].
  11. Dror O, Schneidman-Duhovny D, Shulman-Peleg A, Nussinov R, Wolfson H.J, Sharan R. (2007) Structural similarity is a prominent feature of genetic interactions, RECOMB 2006 Satellite Workshops on Systems Biology, and on Computational Proteomics, San Diego, CA, USA, December 1-3, 2006, Lecture Notes in Computer Science , Springer Verlag, Vol. 4532.
  12. Benyamini H, Shulman-Peleg A, Wolfson H.J, Belgorodsky B, Fadeev L, Gozin M. (2006) Interaction of C60-Fullerene and Carboxyfullerene with Proteins: Docking and Binding Site Alignment, Bioconjugate Chemistry, Vol 17, pp 378-386.
  13. Shatsky M, Shulman-Peleg A, Nussinov R, Wolfson H.J. (2006) The Multiple Common Point Set Problem and its Application to Molecule Binding Pattern Detection, J. Comp. Biol., Vol 13, pp. 407-428.[PDF][Link]
  14. Dror O, Shulman-Peleg A, Nussinov R, Wolfson H.J. (2006) Predicting molecular interactions in silico: I. A updated guide to pharmacophore identification and its applications to drug design. Book volumes "Frontiers in Medicinal Chemistry", Vol. 3, pp. 551-584. [Link].
  15. Shulman-Peleg A, Shatsky M, Nussinov R. and Wolfson H.J. (2005) MAPPIS: Multiple 3D Alignment of Protein-Protein Interfaces, CompLife 2005, Konstanz, Germany, September 25 - 27, 2005. Lecture Notes in Computer Science, Springer Verlag, Volume 3695, pp. 91-103 [PDF] [Link].
  16. Mintz A, Shulman-Peleg A, Wolfson H.J. , Nussinov R. (2005) Generation and Analysis of a Protein-Protein Interface Dataset with Similar Chemical and Spatial Patterns of Interactions, Proteins: Structure, Function, and Genetics, 2005, 61(1), 6-20.[Link].
  17. Shulman-Peleg A, Nussinov R, Wolfson H.J. (2005) SiteEngines: Recognition and Comparison of Binding Sites and Protein-Protein Interfaces, Nucleic Acids Research, Vol. 33 (Web Server Issue):W337-W341 [Link].
  18. Shatsky M, Shulman-Peleg A, Nussinov R, Wolfson H.J (2005) Recognition of Binding Patterns Common to a Set of Protein Structures, RECOMB 2005, Cambridge MA, May 14-18, 2005. Lecture Notes in Computer Science, Springer Verlag, Volume 3500, pp. 440-455 [PDF].
  19. Wolfson H.J., Shatsky M, Schneidman-Duhovny D, Dror O, Shulman-Peleg A, Ma B, Nussinov R. (2005) From Structure to Function: Methods and Applications, Current Protein Peptide Science, 6(2), 171-183[PDF].
  20. Dror O, Shulman-Peleg A, Nussinov R, Wolfson H.J (2004) Predicting molecular interactions in silico: I. A guide to pharmacophore identification and its applications to drug design. Curr Med Chem. Jan;11(1):71-90. Review [PDF].
  21. Shulman-Peleg A., Mintz S. Nussinov R, Wolfson H.J. (2004)Protein-Protein Interfaces: Recognition of Similar Spatial and Chemical Organizations,  In Jonassen and J. Kim (Eds.): Algorithms in Bioinformatics: 4th International Workshop, WABI 2004, Bergen, Norway, 2004.  Springer Verlag , Lecture Notes in Computer Science, Volume 3240, pp. 194-205 [PDF]
  22. Shulman-Peleg A, Nussinov R, Wolfson H.J (2004) , Recognition of functional sites in protein structures. J Mol Biol. 2004 Jun 4;339(3):607-33 [PDF] [ScienceDirect Link]